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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18949870_19067750_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18949870 - 19067750
Intron Length:
117881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCAACCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTATTTTCAACC
Flanking Amino Acid:
LCLKYPRDKWRNIYQKIRDH
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.8
38.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
78
0.63
0.8
75.4
33.2
Minor 5ss
35.1
-1.7
2.7
42.5
44.3
Minor BPS
66.5
0.5
1.5
75.01
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020595
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034863
18942765 - 19067788
125024