About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_18955948_18980610_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18955948 - 18980610
Intron Length:
24663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATGTC
5'SS Class:
major
3'SS Sequence:
CCTCTTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
GTGACAAAAACT
Flanking Amino Acid:
RPQHPSHLHRWSFHRPTAAS
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.7
33.7
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
77
0.61
0.7
68.9
31.6
Minor 5ss
36.7
-1.5
3.4
48.8
42.8
Minor BPS
43.9
-0.3
2.1
64
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020595
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013986
18942765 - 18980760
37996