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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1907716_1918321_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1907716 - 1918321
Intron Length:
10606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TTTTCTTTGAAT
Flanking Amino Acid:
FLSAEAAGLTGIVAVLFCGV
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.6
90.6
20.3
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
78.6
0.64
0.9
74.6
39
Minor 5ss
36.3
-1.6
3.3
49
47.2
Minor BPS
78
0.96
1.3
92.24
29.8

Associated Gene:

Gene:
SLC9A9
Ensembl Gene ID:
ENSAPLG00000000606
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001069
1821682 - 2036835
215154