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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_19106964_19119456_F

Intron Information:

Intron Rank:
129253
Intron Class:
major
Intron Phase:
Intron Coordinates:
19106964 - 19119456
Intron Length:
12493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTGAG
U12 Branch Point Sequence:
AGTGCTGGCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.5
40.6
Major BPS
49.4
-0
1.6
48.8
46.3
Major PPT
85.6
0.8
0.7
80.7
24.5
Minor 5ss
39.5
-1.2
3
50.7
39.9
Minor BPS
39.6
-0.7
2.4
59.39
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019531
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045352
19093509 - 19119917
26409