Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_19288412_19300632_F

Intron Information:

Intron Rank:

140684

Intron Class:

major

Intron Phase:

Intron Coordinates:

19288412 - 19300632

Intron Length:

12221

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTGAGTTTT

5'SS Class:

major

3'SS Sequence:

CACTTTTGGACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

TTGTTTTTACAA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.7

0.56

1.1

77.3

33.6

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

66.8

0.38

1.1

63.8

41.5

Minor 5ss

43.6

-0.7

3.1

68.1

42.7

Minor BPS

55.4

0.17

1.7

67.43

39.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025737

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043108

19288338 - 19307084

18747