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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_19300747_19305277_F

Intron Information:

Intron Rank:
140687
Intron Class:
major
Intron Phase:
Intron Coordinates:
19300747 - 19305277
Intron Length:
4531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTAATTCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TCTGGCTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
70
0.5
1
67
39.8
Major PPT
72.5
0.51
0.9
65.6
39.7
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
63.3
0.49
1.9
79.08
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025737
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044319
19297693 - 19307084
9392