Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_19300747_19306810_F

Intron Information:

Intron Rank:

140685

Intron Class:

major

Intron Phase:

Intron Coordinates:

19300747 - 19306810

Intron Length:

6064

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGCAAA

5'SS Class:

strong_major

3'SS Sequence:

TCTGGTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTACAC

U12 Branch Point Sequence:

CATCTCTACACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.1

0.97

0.8

83.2

30.8

Major BPS

60.3

0.26

1.1

68.9

36.5

Major PPT

81.4

0.71

0.9

72.6

42.4

Minor 5ss

38.7

-1.3

2.8

48.1

47.6

Minor BPS

46.9

-0.1

2.1

65.68

44.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025737

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043108

19288338 - 19307084

18747