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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_19406450_19406651_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19406450 - 19406651
Intron Length:
202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTGCT
5'SS Class:
major
3'SS Sequence:
AACTGTTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATCCTCATAACT
Flanking Amino Acid:
WNPISDLLASGSGDSTARIW
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
71.5
38.6
Major BPS
80
0.75
1
78.6
31
Major PPT
72
0.5
0.9
65.9
40
Minor 5ss
41
-1
3.1
50.4
46
Minor BPS
60.5
0.41
1.6
76.59
39.6

Associated Gene:

Gene:
TBL1XR1
Ensembl Gene ID:
ENSAPLG00000013445
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014067
19357704 - 19415674
57971