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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_19406794_19407091_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19406794 - 19407091
Intron Length:
298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTCAA
5'SS Class:
major
3'SS Sequence:
TTTTTGCTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
GTAAAATTAAAT
Flanking Amino Acid:
NKDVTSLDWNSEGTLLATGS
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.3
74.1
38.3
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
80.2
0.68
1
77.3
37
Minor 5ss
34.9
-1.7
2.9
40.4
38.9
Minor BPS
47.9
-0
1.9
66.96
42.2

Associated Gene:

Gene:
TBL1XR1
Ensembl Gene ID:
ENSAPLG00000013445
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014067
19357704 - 19415674
57971