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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_19407355_19409139_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19407355 - 19409139
Intron Length:
1785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTAATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTATTGTTAATT
Flanking Amino Acid:
NFILSAGVDKTTIIWDAHTG
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.1
24.3
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
75.2
0.57
1
69.8
39.5
Minor 5ss
31.8
-2.1
3
37.8
47
Minor BPS
65.1
0.55
2
84.08
37.1

Associated Gene:

Gene:
TBL1XR1
Ensembl Gene ID:
ENSAPLG00000013445
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014067
19357704 - 19415674
57971