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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_19410484_19410977_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19410484 - 19410977
Intron Length:
494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TGTTCAATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
AAGACTTCAACT
Flanking Amino Acid:
RPIKTFQGHTNEVNAIKWDP
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
78.5
35.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
74.7
0.56
0.9
71.7
38.3
Minor 5ss
40.6
-1.1
2.8
58.6
39.3
Minor BPS
56.2
0.27
1.6
68.86
41.7

Associated Gene:

Gene:
TBL1XR1
Ensembl Gene ID:
ENSAPLG00000013445
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014067
19357704 - 19415674
57971