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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_19411053_19412165_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19411053 - 19412165
Intron Length:
1113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGGA
5'SS Class:
major
3'SS Sequence:
CATTTTATCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTGTCTTCCATT
Flanking Amino Acid:
ASCSDDMTLKIWSMKQDSCV
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
65.9
39.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.5
0.55
0.8
69.5
35.1
Minor 5ss
28.7
-2.4
3.5
38.6
46.4
Minor BPS
52.8
0.17
2
75.51
42.1

Associated Gene:

Gene:
TBL1XR1
Ensembl Gene ID:
ENSAPLG00000013445
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014067
19357704 - 19415674
57971