About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_19412294_19412478_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19412294 - 19412478
Intron Length:
185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTATTT
5'SS Class:
major
3'SS Sequence:
TCTCTCTTGATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCTCTCTTGATA
Flanking Amino Acid:
NNPNANLMLASASFDSTVRL
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.1
74.6
36.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
74.7
0.56
0.9
72.2
32.5
Minor 5ss
42.9
-0.8
3.4
65.4
45.7
Minor BPS
66.5
0.51
1.2
70.93
35.3

Associated Gene:

Gene:
TBL1XR1
Ensembl Gene ID:
ENSAPLG00000013445
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014067
19357704 - 19415674
57971