Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_19532807_19545868_F

Intron Information:

Intron Rank:

125089

Intron Class:

major

Intron Phase:

Intron Coordinates:

19532807 - 19545868

Intron Length:

13062

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTAAGTACA

5'SS Class:

major

3'SS Sequence:

CACAACATCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

CTGTTCACAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.9

0.61

1.1

36.3

Major BPS

100

1.24

0.5

100

Major PPT

60.3

0.23

54.7

39.4

Minor 5ss

38.9

-1.2

2.7

53.8

42.8

Minor BPS

49.8

-0

1.9

63.98

42.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017363

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048269

19532426 - 19546508

14083