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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_19735714_19750281_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19735714 - 19750281
Intron Length:
14568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
CCATTCTCCATT
Flanking Amino Acid:
LVQQAPPGLYRNILYRLDER
Intron Amino Acid Position:
715

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
72.1
39.9
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
83.4
0.75
0.7
81.7
30.3
Minor 5ss
44.5
-0.6
3.2
64.5
46.9
Minor BPS
46
-0.2
1.9
59.82
44.4

Associated Gene:

Gene:
NAALADL2
Ensembl Gene ID:
ENSAPLG00000010077
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025954
19735146 - 20118710
383565
ENSAPLT00000038204
19735146 - 20047479
312334
ENSAPLT00000025231
19735146 - 19968972
233827
ENSAPLT00000036333
19735515 - 20050666
315152
ENSAPLT00000033545
19735515 - 20008807
273293
ENSAPLT00000027055
19735146 - 20047479
312334
ENSAPLT00000041030
19735146 - 19965890
230745