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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_19748705_19750281_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19748705 - 19750281
Intron Length:
1577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTAATATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GTGTAATTAATG
Flanking Amino Acid:
LVQQAPPGLYRFNAAIFLV*
Intron Amino Acid Position:
732

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
72.1
39.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
76.7
0.6
0.9
69.4
40.1
Minor 5ss
44.5
-0.6
3.2
64.5
46.9
Minor BPS
51.2
-0.1
1.9
58.52
43

Associated Gene:

Gene:
NAALADL2
Ensembl Gene ID:
ENSAPLG00000010077
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010487
19748529 - 20047479
298951