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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_19790521_19807637_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19790521 - 19807637
Intron Length:
17117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGTTAAA
5'SS Class:
major
3'SS Sequence:
TTCTTTCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
GAATCCTAAAAG
Flanking Amino Acid:
FSYEDINKSENSSFLSEALF
Intron Amino Acid Position:
583

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
76.1
35
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
87.6
0.85
0.6
83.5
25
Minor 5ss
33.7
-1.9
2.9
41.9
44.8
Minor BPS
51.6
-0
1.9
56
44.4

Associated Gene:

Gene:
NAALADL2
Ensembl Gene ID:
ENSAPLG00000010077
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025954
19735146 - 20118710
383565
ENSAPLT00000041030
19735146 - 19965890
230745
ENSAPLT00000025231
19735146 - 19968972
233827
ENSAPLT00000038204
19735146 - 20047479
312334
ENSAPLT00000010487
19748529 - 20047479
298951
ENSAPLT00000036333
19735515 - 20050666
315152
ENSAPLT00000010309
19611092 - 20050666
439575
ENSAPLT00000033545
19735515 - 20008807
273293