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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_19832178_19836495_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19832178 - 19836495
Intron Length:
4318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTCTTTATTT
Flanking Amino Acid:
IGYLKGTVFPDRYVLIGSHH
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.9
36.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.1
0.9
0.7
88.2
28.6
Minor 5ss
36.2
-1.6
2.7
42.7
38.4
Minor BPS
70
0.71
1.5
83.14
39

Associated Gene:

Gene:
NAALADL2
Ensembl Gene ID:
ENSAPLG00000010077
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025231
19735146 - 19968972
233827
ENSAPLT00000036333
19735515 - 20050666
315152
ENSAPLT00000010487
19748529 - 20047479
298951
ENSAPLT00000033545
19735515 - 20008807
273293
ENSAPLT00000010309
19611092 - 20050666
439575
ENSAPLT00000027055
19735146 - 20047479
312334
ENSAPLT00000041030
19735146 - 19965890
230745
ENSAPLT00000025954
19735146 - 20118710
383565
ENSAPLT00000038204
19735146 - 20047479
312334