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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_19873449_19897345_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19873449 - 19897345
Intron Length:
23897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TTTTCCTAAAAG
Flanking Amino Acid:
KLGQSPLLYKLSLLEDAGFG
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
83
36.1
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
86.3
0.82
0.6
85.2
22.3
Minor 5ss
36.5
-1.5
3
50.8
45.5
Minor BPS
68.4
0.44
1.8
76.73
40.6

Associated Gene:

Gene:
NAALADL2
Ensembl Gene ID:
ENSAPLG00000010077
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025954
19735146 - 20118710
383565
ENSAPLT00000038204
19735146 - 20047479
312334
ENSAPLT00000025231
19735146 - 19968972
233827
ENSAPLT00000036333
19735515 - 20050666
315152
ENSAPLT00000010487
19748529 - 20047479
298951
ENSAPLT00000033545
19735515 - 20008807
273293
ENSAPLT00000010309
19611092 - 20050666
439575
ENSAPLT00000027055
19735146 - 20047479
312334
ENSAPLT00000041030
19735146 - 19965890
230745