About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_20057296_20118651_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
20057296 - 20118651
Intron Length:
61356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCTCC
5'SS Class:
major
3'SS Sequence:
TGTTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
GTATTATGAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
66.7
40.1
Major BPS
75.5
0.63
1
66
40.9
Major PPT
89.2
0.88
0.7
84.5
30.4
Minor 5ss
44.7
-0.6
2.8
52.1
44.7
Minor BPS
49.2
0.02
1.8
69.37
40.4

Associated Gene:

Gene:
NAALADL2
Ensembl Gene ID:
ENSAPLG00000010077
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025954
19735146 - 20118710
383565