Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_20124096_20153275_R

Intron Information:

Intron Rank:

133863

Intron Class:

major

Intron Phase:

Intron Coordinates:

20124096 - 20153275

Intron Length:

29180

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGGAGC

5'SS Class:

strong_major

3'SS Sequence:

CTCCCTGTCGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGCCAT

U12 Branch Point Sequence:

TCTTTTGCCATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

68.2

Major BPS

62.2

0.3

1.4

72.5

43.5

Major PPT

0.43

0.8

64.2

Minor 5ss

33.1

-1.9

3.2

43.9

43.7

Minor BPS

40.7

-0.6

2.4

62.38

43.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019278

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026535

20123370 - 20153822

30453