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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_20178400_20179146_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20178400 - 20179146
Intron Length:
747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TACTGTGTAACA
Flanking Amino Acid:
MTYWTNFAKTGDPNQPVPQD
Intron Amino Acid Position:
550

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
74.9
35.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
92.6
0.96
0.5
92.8
16.9
Minor 5ss
31.1
-2.2
2.6
30
35.1
Minor BPS
47.7
-0.1
2.3
63.63
43.2

Associated Gene:

Gene:
NLGN1
Ensembl Gene ID:
ENSAPLG00000010082
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036480
20176941 - 20477013
300073
ENSAPLT00000033572
20176941 - 20477013
300073
ENSAPLT00000022418
20177571 - 20606567
428997
ENSAPLT00000010518
20177571 - 20477013
299443