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Intron Name: Anas_platyrhynchos_platyrhynchos_9_20179937_20183941_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20179937 - 20183941

Intron Length:

4005

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTATGC

5'SS Class:

major

3'SS Sequence:

TTTCTCCCCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TAGCTTTTAAAT

Flanking Amino Acid:

EGNRWSNSTKGLFQRAIAQS

Intron Amino Acid Position:

287

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.7

0.51

1.1

61.4

38.3

Major BPS

90.4

0.7

90.2

19.3

Major PPT

82.4

0.73

0.7

76.9

25.2

Minor 5ss

44.4

-0.6

2.8

44.5

Minor BPS

60.1

0.4

1.4

71.43

39.3

Associated Gene:

Gene:

NLGN1

Ensembl Gene ID:

ENSAPLG00000010082

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010518

20177571 - 20477013

299443

ENSAPLT00000036480

20176941 - 20477013

300073

ENSAPLT00000033572

20176941 - 20477013

300073

ENSAPLT00000022418

20177571 - 20606567

428997