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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_20371896_20380662_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20371896 - 20380662
Intron Length:
8767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTGTCTTAATA
Flanking Amino Acid:
LGDNDGAEDEDIRDSGGPKP
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
82.4
30.8
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
92.1
0.95
0.7
85.1
34.9
Minor 5ss
58.1
0.27
2.3
76
39.6
Minor BPS
77
0.84
1.2
82.43
32.9

Associated Gene:

Gene:
NLGN1
Ensembl Gene ID:
ENSAPLG00000010082
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036480
20176941 - 20477013
300073
ENSAPLT00000033572
20176941 - 20477013
300073
ENSAPLT00000022418
20177571 - 20606567
428997