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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_20371896_20476207_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20371896 - 20476207
Intron Length:
104312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTGTCTTAATA
Flanking Amino Acid:
YLNIYVPTEDDIRDSGGPKP
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.8
78.1
26.4
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
92.1
0.95
0.7
85.1
34.9
Minor 5ss
34.2
-1.8
2.8
36.8
41.9
Minor BPS
77
0.84
1.2
82.43
32.9

Associated Gene:

Gene:
NLGN1
Ensembl Gene ID:
ENSAPLG00000010082
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010518
20177571 - 20477013
299443