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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_20380723_20475700_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20380723 - 20475700
Intron Length:
94978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCAATCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTCCTCCATT
Flanking Amino Acid:
KPGKKICRKGGPLTKKQTDD
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
88.8
25
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
71
0.47
0.8
63.3
37.2
Minor 5ss
45.4
-0.5
2.5
59.5
45.1
Minor BPS
65.7
0.57
2
88.16
37.4

Associated Gene:

Gene:
NLGN1
Ensembl Gene ID:
ENSAPLG00000010082
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036480
20176941 - 20477013
300073