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Intron Name: Anas_platyrhynchos_platyrhynchos_9_20380723_20476207_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20380723 - 20476207

Intron Length:

95485

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGTTAA

5'SS Class:

strong_major

3'SS Sequence:

TTCTCAATCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAA

U12 Branch Point Sequence:

TTTTCCTCCATT

Flanking Amino Acid:

YLNIYVPTEDGPLTKKQTDD

Intron Amino Acid Position:

165

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.9

0.82

0.8

78.1

26.4

Major BPS

85.7

0.89

0.8

85.9

22.5

Major PPT

0.47

0.8

63.3

37.2

Minor 5ss

34.2

-1.8

2.8

36.8

41.9

Minor BPS

65.7

0.57

88.16

37.4

Associated Gene:

Gene:

NLGN1

Ensembl Gene ID:

ENSAPLG00000010082

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033572

20176941 - 20477013

300073

ENSAPLT00000022418

20177571 - 20606567

428997