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Intron Name: Anas_platyrhynchos_platyrhynchos_9_20477014_20606187_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

20477014 - 20606187

Intron Length:

129174

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAGGTGGC

5'SS Class:

strong_major

3'SS Sequence:

TCATTTTCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTATTTTCATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.4

0.81

73.2

37.5

Major BPS

100

1.24

0.5

100

Major PPT

84.5

0.78

0.8

77.1

36.9

Minor 5ss

31.6

-2.1

3.4

43.4

44.3

Minor BPS

58.4

0.35

1.7

79.53

37.3

Associated Gene:

Gene:

NLGN1

Ensembl Gene ID:

ENSAPLG00000010082

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022418

20177571 - 20606567

428997