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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_20648601_20658880_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20648601 - 20658880
Intron Length:
10280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTATCTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TCTCTCTTATCT
Flanking Amino Acid:
KPDLALNHSHRSIFLNPAYF
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
77.3
0.61
1
78.6
33.5
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
66
0.58
1.6
80.81
41.1

Associated Gene:

Gene:
SPATA16
Ensembl Gene ID:
ENSAPLG00000010186
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010610
20633523 - 20707996
74474