Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_20670304_20682411_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20670304 - 20682411

Intron Length:

12108

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAATT

5'SS Class:

strong_major

3'SS Sequence:

TCTTTCACTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATCAT

U12 Branch Point Sequence:

ATTTCTTTCACT

Flanking Amino Acid:

ISKLIKLYWQAMIEEAITRE

Intron Amino Acid Position:

309

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

0.9

27.5

Major BPS

79.4

0.73

80.1

Major PPT

80.5

0.69

0.7

78.9

28.3

Minor 5ss

38.8

-1.3

3.2

57.6

46.6

Minor BPS

0.84

1.7

90.07

34.1

Associated Gene:

Gene:

SPATA16

Ensembl Gene ID:

ENSAPLG00000010186

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010610

20633523 - 20707996

74474