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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_20682560_20685760_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20682560 - 20685760
Intron Length:
3201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTCATATTC
Flanking Amino Acid:
HPDYVEHIYTDPHGLHILPQ
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
100
1.24
0.5
100
0
Major PPT
82.8
0.74
0.9
74.2
39.9
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
53.4
0.09
1.8
69.19
36.4

Associated Gene:

Gene:
SPATA16
Ensembl Gene ID:
ENSAPLG00000010186
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010610
20633523 - 20707996
74474