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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_20685908_20686119_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20685908 - 20686119
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGCCAA
5'SS Class:
major
3'SS Sequence:
TTTCATTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGTGATTTCATT
Flanking Amino Acid:
LSSRKLPIFSDQKAPFSPIT
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1.1
65.2
42.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.6
0.71
0.7
81
30.6
Minor 5ss
36.1
-1.6
3.2
47.1
48.3
Minor BPS
47.8
-0
2
68.98
42.6

Associated Gene:

Gene:
SPATA16
Ensembl Gene ID:
ENSAPLG00000010186
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010610
20633523 - 20707996
74474