About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_20735504_20736402_R


Intron Information:

Intron Rank:
7

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
20735504 - 20736402

Intron Length:
899

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTTATTGTT

5'SS Class:
major

3'SS Sequence:
TTTTTTTACCTAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTTTTAC

U12 Branch Point Sequence:
TTTTTTTTACCT

Flanking Amino Acid:
ANMEEMTEMQGGHYLPVGDE

Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
75.8
0.61
1.2
79.2
34.2

Major BPS
86.6
0.91
0.8
77.7
36.7

Major PPT
82.4
0.73
0.8
77.9
35.6

Minor 5ss
35
-1.7
3.2
50.5
45.8

Minor BPS
74.2
0.84
1.5
90.89
33.1

Associated Gene:

Gene:
ECT2

Ensembl Gene ID:

Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

20718868 - 20741470
22603

20719199 - 20741442
22244