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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_20736534_20736652_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20736534 - 20736652
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
IYKAWEKRNESDFCAVDDDF
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.1
0.79
0.7
77.1
31.6
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
ECT2
Ensembl Gene ID:
ENSAPLG00000010339
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019315
20718868 - 20741470
22603
ENSAPLT00000010847
20719199 - 20741442
22244