About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_20737470_20738478_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20737470 - 20738478
Intron Length:
1009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGACTC
5'SS Class:
major
3'SS Sequence:
CTTTATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTGCCTTTATT
Flanking Amino Acid:
FTGFRKKDELVKLVTLVHHM
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
65.4
38.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
89.2
0.88
0.7
84.2
30.3
Minor 5ss
38.4
-1.3
3.3
53.5
38.4
Minor BPS
70.7
0.73
1.7
87.87
37.8

Associated Gene:

Gene:
ECT2
Ensembl Gene ID:
ENSAPLG00000010339
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019315
20718868 - 20741470
22603
ENSAPLT00000010847
20719199 - 20741442
22244