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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_20740222_20740322_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20740222 - 20740322
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
CTGTACTGAAGT
Flanking Amino Acid:
KHEELLKALETIKIMEVPVI
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.9
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
80.3
0.68
0.7
75.3
26.8
Minor 5ss
42.4
-0.8
3.1
57.3
47.4
Minor BPS
49.7
0.05
2
69.63
46.8

Associated Gene:

Gene:
ECT2
Ensembl Gene ID:
ENSAPLG00000010339
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019315
20718868 - 20741470
22603