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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_20747440_20754952_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20747440 - 20754952
Intron Length:
7513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGCGG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TCTGAAGTAACA
Flanking Amino Acid:
DATFRAVQQTCHLIHYFRLS
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
51.7
46.6
Major BPS
69.8
0.49
1
61
37.5
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
25.2
-2.9
3.1
30.3
42.8
Minor BPS
44
-0.4
2.4
61.12
44.7

Associated Gene:

Gene:
NCEH1
Ensembl Gene ID:
ENSAPLG00000011627
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012109
20747302 - 20762233
14932