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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_20756587_20758973_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20756587 - 20758973
Intron Length:
2387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
TCTTCTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TGTCTCTTACCT
Flanking Amino Acid:
ESLNAVVVSVEYRLVPEVCF
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
76.8
33.7
Major BPS
80
0.75
1
78.6
31
Major PPT
87.8
0.85
0.6
84.4
23.4
Minor 5ss
33.2
-1.9
2.8
38.8
40.3
Minor BPS
66
0.58
1.6
81.89
39.4

Associated Gene:

Gene:
NCEH1
Ensembl Gene ID:
ENSAPLG00000011627
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012109
20747302 - 20762233
14932