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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_20759146_20760615_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20759146 - 20760615
Intron Length:
1470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACATCC
5'SS Class:
major
3'SS Sequence:
GTTCTTCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TAATCTTTATTT
Flanking Amino Acid:
GNLAAAVCQQLSKDEHLTVR
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
69.5
36.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.3
0.75
0.8
77.6
31.2
Minor 5ss
44.7
-0.6
2.8
60.7
43.8
Minor BPS
65.4
0.56
1.5
77.84
38.8

Associated Gene:

Gene:
NCEH1
Ensembl Gene ID:
ENSAPLG00000011627
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012109
20747302 - 20762233
14932