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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_20801741_20804716_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20801741 - 20804716
Intron Length:
2976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGACTC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCATTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCACACTTAACA
Flanking Amino Acid:
KNNKQTVKMLVVVVFAFILC
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
70.1
40.8
Major BPS
100
1.24
0.5
100
0
Major PPT
80.9
0.69
0.8
78.8
34.4
Minor 5ss
35.5
-1.7
3.4
50.8
45.7
Minor BPS
65.8
0.49
1.5
71.13
40.4

Associated Gene:

Gene:
GHSR
Ensembl Gene ID:
ENSAPLG00000012064
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012545
20800987 - 20805021
4035