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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_20816911_20823453_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20816911 - 20823453
Intron Length:
6543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTGAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTAACT
Flanking Amino Acid:
LVGRESEYKQVYKGDETTFQ
Intron Amino Acid Position:
1048

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
76.9
33.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.1
0.7
1
82.9
32.5
Minor 5ss
31.4
-2.1
3.1
39.2
46.2
Minor BPS
78.3
0.97
1.3
91.5
30.9

Associated Gene:

Gene:
FNDC3B
Ensembl Gene ID:
ENSAPLG00000012065
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040776
20816599 - 20955213
138615
ENSAPLT00000019698
20816599 - 20955213
138615
ENSAPLT00000012637
20816599 - 20955213
138615