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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_20823582_20826319_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20823582 - 20826319
Intron Length:
2738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATATTAAAT
Flanking Amino Acid:
TTKSVPPAIKAPRVTQLEGN
Intron Amino Acid Position:
1005

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
88.7
25.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.3
0.84
0.8
82.3
33.4
Minor 5ss
43.5
-0.7
2.6
59.2
45.4
Minor BPS
62.8
0.48
1.7
83.27
36.9

Associated Gene:

Gene:
FNDC3B
Ensembl Gene ID:
ENSAPLG00000012065
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040776
20816599 - 20955213
138615
ENSAPLT00000019698
20816599 - 20955213
138615
ENSAPLT00000012637
20816599 - 20955213
138615