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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_20851988_20853592_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20851988 - 20853592
Intron Length:
1605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATGTGAT
5'SS Class:
major
3'SS Sequence:
TGTTTCCCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TACGTATTAATG
Flanking Amino Acid:
FRVRALNDGGYGPYSEATEI
Intron Amino Acid Position:
751

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
74
36.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
79
0.65
0.8
71
36
Minor 5ss
40
-1.1
3.2
48.8
47.3
Minor BPS
48.9
-0.2
1.7
52.76
42.5

Associated Gene:

Gene:
FNDC3B
Ensembl Gene ID:
ENSAPLG00000012065
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012637
20816599 - 20955213
138615
ENSAPLT00000040776
20816599 - 20955213
138615
ENSAPLT00000019698
20816599 - 20955213
138615