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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_20853766_20855048_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20853766 - 20855048
Intron Length:
1283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCCAC
5'SS Class:
major
3'SS Sequence:
GTTTTCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTGAA
U12 Branch Point Sequence:
TGTTAGTGAATT
Flanking Amino Acid:
PKHKEVQLQWDVPPSESDCP
Intron Amino Acid Position:
693

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1.1
63.2
43.4
Major BPS
64.3
0.35
1.2
55.4
42
Major PPT
84.8
0.78
0.7
77.7
36.7
Minor 5ss
37.7
-1.4
3
42.7
44.4
Minor BPS
48.8
-0
2.3
74.83
41.8

Associated Gene:

Gene:
FNDC3B
Ensembl Gene ID:
ENSAPLG00000012065
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040776
20816599 - 20955213
138615
ENSAPLT00000019698
20816599 - 20955213
138615
ENSAPLT00000012637
20816599 - 20955213
138615