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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_20855155_20855964_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20855155 - 20855964
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAACTAT
U12 Branch Point Sequence:
CTAACTTCAGCT
Flanking Amino Acid:
CCISTGGHSQCSESLPVRTL
Intron Amino Acid Position:
658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
54.3
0.11
1.3
53.1
42.3
Major PPT
88.5
0.87
0.7
80.8
31.2
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
48.2
-0
1.8
65.88
44.5

Associated Gene:

Gene:
FNDC3B
Ensembl Gene ID:
ENSAPLG00000012065
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040776
20816599 - 20955213
138615
ENSAPLT00000019698
20816599 - 20955213
138615
ENSAPLT00000012637
20816599 - 20955213
138615