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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_20863642_20871389_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20863642 - 20871389
Intron Length:
7748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
AGCTATCTAATT
Flanking Amino Acid:
ITSYLLEWDEGKRNSGFREC
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.9
28.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
81.2
0.7
0.8
73.6
37
Minor 5ss
37.5
-1.4
2.8
51.6
44.9
Minor BPS
48.3
-0
1.8
64.67
40

Associated Gene:

Gene:
FNDC3B
Ensembl Gene ID:
ENSAPLG00000012065
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040776
20816599 - 20955213
138615
ENSAPLT00000012637
20816599 - 20955213
138615