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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_20899771_20901884_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20899771 - 20901884
Intron Length:
2114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TCTGACTTAATG
Flanking Amino Acid:
HLPPTIYGEQEIIPLYGMSS
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
74.8
38.1
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
86.5
0.82
0.8
84.4
30.5
Minor 5ss
34.2
-1.8
2.8
40.6
45.6
Minor BPS
60.3
0.18
1.7
63.84
44.5

Associated Gene:

Gene:
FNDC3B
Ensembl Gene ID:
ENSAPLG00000012065
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019698
20816599 - 20955213
138615
ENSAPLT00000012637
20816599 - 20955213
138615
ENSAPLT00000040776
20816599 - 20955213
138615