Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2090087_2090185_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2090087 - 2090185

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAT|GCCCTTCCT

5'SS Class:

weak_major

3'SS Sequence:

TCATCTGCAGTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGGTCAT

U12 Branch Point Sequence:

TCATCTGCAGTA

Flanking Amino Acid:

VRSRDPRIHRIMAKTLQTAL

Intron Amino Acid Position:

246

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

51.1

0.03

1.4

57.1

41.1

Major BPS

60.9

0.27

1.3

63.1

44.4

Major PPT

0.29

59.4

36.6

Minor 5ss

23.4

-3.1

3.9

38.5

39.3

Minor BPS

41.2

-0.6

2.2

51.77

40.9

Associated Gene:

Gene:

CHST2

Ensembl Gene ID:

ENSAPLG00000002346

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002350

2089696 - 2091658

1963