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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_20902129_20910093_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
20902129 - 20910093
Intron Length:
7965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTTC
5'SS Class:
weak_major
3'SS Sequence:
CCTTCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAA
U12 Branch Point Sequence:
ATAACCTGAACT
Flanking Amino Acid:
IHVPPGYISQVIEDNTGVRR
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
74.9
36.3
Major BPS
60.8
0.27
1
51.3
35.5
Major PPT
82.9
0.74
0.7
76.7
25.3
Minor 5ss
65.8
0.53
2.2
76
40.1
Minor BPS
69.2
0.68
1.5
81.82
38.6

Associated Gene:

Gene:
FNDC3B
Ensembl Gene ID:
ENSAPLG00000012065
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012637
20816599 - 20955213
138615
ENSAPLT00000040776
20816599 - 20955213
138615
ENSAPLT00000019698
20816599 - 20955213
138615