About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21014620_21016338_F

Intron Information:

Intron Rank:
135722
Intron Class:
major
Intron Phase:
Intron Coordinates:
21014620 - 21016338
Intron Length:
1719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAACACT
5'SS Class:
major
3'SS Sequence:
TCTCTCCTGGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCGATTTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.2
69.8
40.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.2
0.5
0.9
69.6
31.1
Minor 5ss
37.7
-1.4
2.9
50.7
45.3
Minor BPS
47.2
-0.1
1.7
60.79
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023056
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044160
21007654 - 21017104
9451